# Plotting Tool for Brain Atlases

## Documentation for package ‘ggseg’ version 1.6.8

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

adapt_scales | Scale ggseg plot axes.
aseg | Freesurfer automatic subcortical segmentation of a brain volume
as_brain_atlas | Create brain atlas
as_ggseg_atlas | Create ggseg atlas
as_ggseg_atlas.brain_atlas | Create ggseg atlas
as_ggseg_atlas.data.frame | Create ggseg atlas
as_ggseg_atlas.default | Create ggseg atlas
as_ggseg_atlas.ggseg_atlas | Create ggseg atlas
brain_atlas | Constructor for brain atlas
brain_join | Join atlas and data
brain_labels | Extract unique labels of brain regions
brain_labels.brain_atlas | Extract unique labels of brain regions
brain_labels.ggseg_atlas | Extract unique labels of brain regions
brain_pal | Generate palettes from the ggseg atlases
brain_pals_info | Get info on brain palettes
brain_regions | Extract unique names of brain regions
brain_regions.brain_atlas | Extract unique names of brain regions
brain_regions.data.frame | Extract unique names of brain regions
brain_regions.ggseg_atlas | Extract unique names of brain regions
dk | Desikan-Killiany Cortical Atlas
GeomBrain | Brain geom
geom_brain | Brain geom
ggseg_atlas | 'ggseg_atlas' class
is_brain_atlas | Validate brain atlas
is_ggseg_atlas | Validate ggseg_atlas
position_brain | Alter brain atlas position
read_atlas_files | Read in atlas data from all subjects
read_freesurfer_stats | Read in raw FreeSurfer stats file
read_freesurfer_table | Read in stats table from FreeSurfer
reposition_brain | Reposition brain slices
scale_brain | Colour and fill scales from the ggseg atlases
scale_brain2 | Colour and fill scales from the ggseg atlases
scale_color_brain | Colour and fill scales from the ggseg atlases
scale_color_brain2 | Colour and fill scales from the ggseg atlases
scale_colour_brain | Colour and fill scales from the ggseg atlases
scale_colour_brain2 | Colour and fill scales from the ggseg atlases
scale_continous_brain | Axis and label scales from the ggseg atlases
scale_fill_brain | Colour and fill scales from the ggseg atlases
scale_fill_brain2 | Colour and fill scales from the ggseg atlases
scale_labs_brain | Axis and label scales from the ggseg atlases
scale_x_brain | Axis and label scales from the ggseg atlases
scale_y_brain | Axis and label scales from the ggseg atlases
theme_brain | ggseg plot theme
theme_brain2 | ggseg plot theme
theme_custombrain | ggseg plot theme
theme_darkbrain | ggseg plot theme